Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CLHC1Q8NHS4 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 DFFBP1-201ENST00000433250 979 ntBASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 MYCLP2-201ENST00000449268 967 ntBASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 AC009118.2-201ENST00000613275 655 ntBASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.28□□□□□ -0.12
CLHC1Q8NHS4 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CLHC1Q8NHS4 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC114812.1-204ENST00000449669 728 ntBASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC133539.2-201ENST00000604757 467 ntBASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AC004233.3-201ENST00000607794 1269 ntBASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms