Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 AC242376.1-201ENST00000559033 726 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.73□□□□□ -0.37
ABCA4P78363 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
ABCA4P78363 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 CAP2P1-201ENST00000557743 1390 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
ABCA4P78363 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 LINC01165-201ENST00000445190 1623 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
ABCA4P78363 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 WT1-AS_6.1-201ENST00000614919 121 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
ABCA4P78363 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 NORAD-201ENST00000565493 5339 ntBASIC12.73□□□□□ -0.37
ABCA4P78363 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA4P78363 AC087481.3-201ENST00000602886 1894 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
ABCA4P78363 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA4P78363 PIN4P1-201ENST00000451079 396 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.72□□□□□ -0.37
ABCA4P78363 AC012044.1-201ENST00000603431 297 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 MIR6842-201ENST00000612539 65 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 AC103691.2-201ENST00000618824 433 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 AC242376.2-201ENST00000619355 883 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 CYP51A1P3-201ENST00000400072 1428 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 AL162727.3-201ENST00000635661 2787 ntBASIC12.72□□□□□ -0.37
ABCA4P78363 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA4P78363 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA4P78363 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms