Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 AC015802.1-201ENST00000588104 1449 ntBASIC16.65■□□□□ 0.26
USP11P51784 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 SERPINA13P-202ENST00000478994 924 ntBASIC16.65■□□□□ 0.26
USP11P51784 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 AL160314.3-201ENST00000556041 767 ntBASIC16.65■□□□□ 0.26
USP11P51784 AC027237.1-201ENST00000560942 655 ntBASIC16.65■□□□□ 0.26
USP11P51784 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 PCDHA3-202ENST00000532566 4594 ntBASIC16.65■□□□□ 0.26
USP11P51784 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP11P51784 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
USP11P51784 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 AC004899.1-201ENST00000424687 1714 ntBASIC16.65■□□□□ 0.26
USP11P51784 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP11P51784 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USP11P51784 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.64■□□□□ 0.26
USP11P51784 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
USP11P51784 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 AC026748.1-201ENST00000624349 3251 ntBASIC16.64■□□□□ 0.25
USP11P51784 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.64■□□□□ 0.25
USP11P51784 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
USP11P51784 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 DPM3-202ENST00000368399 517 ntBASIC16.64■□□□□ 0.25
USP11P51784 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.64■□□□□ 0.25
USP11P51784 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.64■□□□□ 0.25
USP11P51784 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 SORD2P-201ENST00000558556 1069 ntBASIC16.64■□□□□ 0.25
USP11P51784 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 RN7SL163P-201ENST00000583100 276 ntBASIC16.64■□□□□ 0.25
USP11P51784 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.64■□□□□ 0.25
USP11P51784 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.64■□□□□ 0.25
USP11P51784 AC004923.1-202ENST00000642106 209 ntBASIC16.64■□□□□ 0.25
USP11P51784 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
USP11P51784 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP11P51784 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.64■□□□□ 0.25
USP11P51784 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.63■□□□□ 0.25
USP11P51784 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.63■□□□□ 0.25
USP11P51784 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.63■□□□□ 0.25
USP11P51784 AP001267.2-201ENST00000532619 2086 ntBASIC16.63■□□□□ 0.25
USP11P51784 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
USP11P51784 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
USP11P51784 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.63■□□□□ 0.25
USP11P51784 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
USP11P51784 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USP11P51784 SNX18-202ENST00000343017 3140 ntBASIC16.63■□□□□ 0.25
USP11P51784 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms