Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.02□□□□□ -0.17
SOX3P41225 BNIP3P29-201ENST00000598302 571 ntBASIC14.02□□□□□ -0.17
SOX3P41225 AC011447.5-201ENST00000616168 564 ntBASIC14.02□□□□□ -0.17
SOX3P41225 RHOXF1P1-202ENST00000635473 501 ntBASIC14.02□□□□□ -0.17
SOX3P41225 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
SOX3P41225 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.02□□□□□ -0.17
SOX3P41225 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 AL137784.3-201ENST00000623858 2288 ntBASIC14.02□□□□□ -0.17
SOX3P41225 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.02□□□□□ -0.17
SOX3P41225 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.02□□□□□ -0.17
SOX3P41225 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SOX3P41225 HSPA7-201ENST00000445535 1927 ntBASIC14.02□□□□□ -0.17
SOX3P41225 AC107918.4-201ENST00000641966 3141 ntBASIC14.01□□□□□ -0.17
SOX3P41225 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
SOX3P41225 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 AC012508.2-201ENST00000567613 1472 ntBASIC14.01□□□□□ -0.17
SOX3P41225 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 CNN2P8-201ENST00000421872 913 ntBASIC14.01□□□□□ -0.17
SOX3P41225 HLA-V-201ENST00000429037 534 ntBASIC14.01□□□□□ -0.17
SOX3P41225 EIF3FP3-201ENST00000434851 1086 ntBASIC14.01□□□□□ -0.17
SOX3P41225 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.01□□□□□ -0.17
SOX3P41225 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 AC022616.1-201ENST00000518688 554 ntBASIC14.01□□□□□ -0.17
SOX3P41225 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 AC138951.2-201ENST00000623455 1161 ntBASIC14.01□□□□□ -0.17
SOX3P41225 AC132938.4-201ENST00000623835 848 ntBASIC14.01□□□□□ -0.17
SOX3P41225 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
SOX3P41225 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
SOX3P41225 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SOX3P41225 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
SOX3P41225 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SOX3P41225 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14□□□□□ -0.17
SOX3P41225 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SOX3P41225 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14□□□□□ -0.17
SOX3P41225 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14□□□□□ -0.17
SOX3P41225 WASH3P-207ENST00000560956 1394 ntBASIC14□□□□□ -0.17
SOX3P41225 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14□□□□□ -0.17
SOX3P41225 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 AL360270.3-201ENST00000609118 1348 ntBASIC14□□□□□ -0.17
SOX3P41225 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SOX3P41225 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SOX3P41225 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms