Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 DKKL1P1-201ENST00000400550 698 ntBASIC17.31■□□□□ 0.36
BRCA1P38398 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC17.31■□□□□ 0.36
BRCA1P38398 PSME2P2-201ENST00000453033 700 ntBASIC17.31■□□□□ 0.36
BRCA1P38398 RNU1-80P-201ENST00000459500 161 ntBASIC17.31■□□□□ 0.36
BRCA1P38398 AC020922.4-201ENST00000621389 339 ntBASIC17.31■□□□□ 0.36
BRCA1P38398 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC17.31■□□□□ 0.36
BRCA1P38398 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
BRCA1P38398 ACE3P-201ENST00000423435 1973 ntBASIC17.3■□□□□ 0.36
BRCA1P38398 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.3■□□□□ 0.36
BRCA1P38398 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.3■□□□□ 0.36
BRCA1P38398 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
BRCA1P38398 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC17.3■□□□□ 0.36
BRCA1P38398 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.3■□□□□ 0.36
BRCA1P38398 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC17.3■□□□□ 0.36
BRCA1P38398 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC17.3■□□□□ 0.36
BRCA1P38398 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC17.3■□□□□ 0.36
BRCA1P38398 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC17.3■□□□□ 0.36
BRCA1P38398 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC17.3■□□□□ 0.36
BRCA1P38398 RN7SL524P-201ENST00000581152 300 ntBASIC17.3■□□□□ 0.36
BRCA1P38398 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC17.3■□□□□ 0.36
BRCA1P38398 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
BRCA1P38398 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.3■□□□□ 0.36
BRCA1P38398 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
BRCA1P38398 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 HNRNPA1P10-201ENST00000444945 962 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC17.29■□□□□ 0.36
BRCA1P38398 DPY19L2P4-201ENST00000479881 442 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC17.29■□□□□ 0.36
BRCA1P38398 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 KF455155.1-201ENST00000604493 303 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 AC123912.6-201ENST00000612657 315 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC17.29■□□□□ 0.36
BRCA1P38398 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 LILRP2-202ENST00000413572 1383 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.29■□□□□ 0.36
BRCA1P38398 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
BRCA1P38398 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC17.29■□□□□ 0.36
BRCA1P38398 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 AC112250.1-201ENST00000504640 745 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.29■□□□□ 0.36
BRCA1P38398 AL049840.2-201ENST00000602722 535 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 AC104506.1-201ENST00000609247 429 ntBASIC17.29■□□□□ 0.36
BRCA1P38398 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC17.29■□□□□ 0.36
BRCA1P38398 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
BRCA1P38398 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.29■□□□□ 0.36
BRCA1P38398 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.28■□□□□ 0.36
BRCA1P38398 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 AL773545.2-201ENST00000442149 472 ntBASIC17.28■□□□□ 0.36
BRCA1P38398 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC17.28■□□□□ 0.36
BRCA1P38398 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC17.28■□□□□ 0.36
BRCA1P38398 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC17.28■□□□□ 0.36
BRCA1P38398 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC17.28■□□□□ 0.36
BRCA1P38398 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
BRCA1P38398 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
BRCA1P38398 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms