Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLDN9O95484 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CLDN9O95484 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.34□□□□□ -0.11
CLDN9O95484 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 AC098614.1-201ENST00000368528 745 ntBASIC14.34□□□□□ -0.11
CLDN9O95484 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.34□□□□□ -0.11
CLDN9O95484 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
CLDN9O95484 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.34□□□□□ -0.11
CLDN9O95484 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.34□□□□□ -0.11
CLDN9O95484 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.34□□□□□ -0.11
CLDN9O95484 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CLDN9O95484 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
CLDN9O95484 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CLDN9O95484 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.34□□□□□ -0.11
CLDN9O95484 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN9O95484 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN9O95484 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN9O95484 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN9O95484 INE2-201ENST00000630399 1874 ntBASIC14.33□□□□□ -0.11
CLDN9O95484 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN9O95484 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
CLDN9O95484 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 RN7SL832P-201ENST00000607781 1756 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 TPM3P8-201ENST00000330554 643 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 AL355864.2-201ENST00000447420 863 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN9O95484 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLDN9O95484 AC011495.1-201ENST00000498085 584 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.33□□□□□ -0.12
CLDN9O95484 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.33□□□□□ -0.12
CLDN9O95484 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CLDN9O95484 AC027307.3-201ENST00000594262 1100 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLDN9O95484 BX088702.1-201ENST00000610784 235 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 AC132938.4-201ENST00000623835 848 ntBASIC14.33□□□□□ -0.12
CLDN9O95484 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN9O95484 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CLDN9O95484 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CLDN9O95484 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN9O95484 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN9O95484 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 AC215219.1-201ENST00000400706 1817 ntBASIC14.32□□□□□ -0.12
CLDN9O95484 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN9O95484 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN9O95484 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms