Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 AF228730.6-201ENST00000641497 218 ntBASIC10.89□□□□□ -0.67
SMKR1H3BMG3 AC084121.3-201ENST00000641716 218 ntBASIC10.89□□□□□ -0.67
SMKR1H3BMG3 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 RN7SL832P-201ENST00000607781 1756 ntBASIC10.89□□□□□ -0.67
SMKR1H3BMG3 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CETP-203ENST00000566128 1733 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
SMKR1H3BMG3 GSN-209ENST00000449733 2702 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 TIMM8BP1-201ENST00000452384 211 ntBASIC10.88□□□□□ -0.67
SMKR1H3BMG3 PPIE-208ENST00000470213 927 ntTSL 3 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AL691432.3-201ENST00000621860 400 ntBASIC10.88□□□□□ -0.67
SMKR1H3BMG3 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AL137783.1-201ENST00000623494 1896 ntBASIC10.88□□□□□ -0.67
SMKR1H3BMG3 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AGAP10P-201ENST00000454844 2418 ntBASIC10.88□□□□□ -0.67
SMKR1H3BMG3 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 AL121723.1-201ENST00000445194 1519 ntBASIC10.88□□□□□ -0.67
SMKR1H3BMG3 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC10.88□□□□□ -0.67
SMKR1H3BMG3 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms