Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TMEM88BA6NKF7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 KC6-207ENST00000600644 2311 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC022080.1-201ENST00000366255 781 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 RN7SL578P-201ENST00000477781 283 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 PRSS3P1-201ENST00000503996 742 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC100858.1-201ENST00000514059 1228 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AL132994.1-201ENST00000554098 400 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ACTBP9-201ENST00000587663 1099 ntBASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMEM88BA6NKF7 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 MBP-230ENST00000528160 584 ntTSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 RN7SL605P-201ENST00000577229 281 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 NF1P11-201ENST00000621292 1282 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 AC007952.5-201ENST00000572818 1486 ntBASIC16.77■□□□□ 0.28
TMEM88BA6NKF7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMEM88BA6NKF7 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 SNRPCP15-201ENST00000424055 192 ntBASIC16.76■□□□□ 0.27
TMEM88BA6NKF7 HNRNPA1P21-201ENST00000424115 961 ntBASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms