Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 RPSAP15-201ENST00000448168 861 ntBASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 AC114947.1-202ENST00000514136 344 ntBASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 AGAP7P-201ENST00000582299 2062 ntBASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 AGAP14-201ENST00000624701 2060 ntBASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
SHROOM4Q9ULL8 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 AC027139.1-201ENST00000565286 951 ntBASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC27.74■■■□□ 2.03
SHROOM4Q9ULL8 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AC144522.1-201ENST00000625111 1658 ntBASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AC006486.2-201ENST00000624246 2199 ntBASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 PARN-202ENST00000420015 2360 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AL512306.1-201ENST00000432698 848 ntBASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 XBP1P1-201ENST00000436573 652 ntBASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
SHROOM4Q9ULL8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 RNA5SP359-201ENST00000364838 113 ntBASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 AL807761.2-201ENST00000422849 729 ntBASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 DBP-202ENST00000593500 712 ntTSL 2 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 RAN-210ENST00000541630 1475 ntTSL 2 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
SHROOM4Q9ULL8 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SHROOM4Q9ULL8 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms