Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC107373.2-201ENST00000607735 490 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC099568.2-201ENST00000609194 695 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 SLC7A15P-201ENST00000424028 1363 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AL591122.2-201ENST00000624125 1853 ntBASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AL138799.1-201ENST00000448213 1675 ntBASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 VDAC1P7-201ENST00000462417 847 ntBASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AC093813.1-201ENST00000605066 256 ntBASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AL662799.1-202ENST00000614205 422 ntBASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC39Q9UFE4 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 NUTM2HP-201ENST00000442076 2498 ntBASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC39Q9UFE4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms