Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 KRT8P28-201ENST00000433288 1390 ntBASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 AHCYP4-201ENST00000419201 1315 ntBASIC18.83■□□□□ 0.61
CHMP4AQ9BY43 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 GAS5-209ENST00000430245 723 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 NKAIN1P1-201ENST00000435754 582 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AC099548.2-209ENST00000480264 625 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 ZNF767P-206ENST00000513792 565 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AC044849.1-201ENST00000519737 1188 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AL160314.3-201ENST00000556041 767 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AC027237.1-201ENST00000560942 655 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 SNORD3B-2-202ENST00000571722 791 ntBASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
CHMP4AQ9BY43 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AC015688.4-201ENST00000580780 1647 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AC008805.1-201ENST00000590892 364 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 NDUFV2P1-201ENST00000596415 907 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 GPR182-203ENST00000622922 591 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 AC144522.1-201ENST00000625111 1658 ntBASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4AQ9BY43 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 VDAC1P1-201ENST00000439229 848 ntBASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 AC104073.2-201ENST00000453737 312 ntBASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4AQ9BY43 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms