Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 IGHEP2-201ENST00000519308 1256 ntBASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC084262.1-201ENST00000567818 751 ntBASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 BX088702.1-201ENST00000610784 235 ntBASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC009145.4-201ENST00000625119 1294 ntBASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC17.37■□□□□ 0.37
SMC1BQ8NDV3 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 FAM197Y6-201ENST00000420524 766 ntBASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 OR2R1P-201ENST00000441404 914 ntBASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 RHOQP2-201ENST00000449922 579 ntBASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 AC080013.5-201ENST00000607044 679 ntBASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SMC1BQ8NDV3 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 PYY2-201ENST00000315776 282 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RPL5P21-201ENST00000404620 815 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 EEF1DP5-201ENST00000431410 772 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 AC027612.2-202ENST00000445955 1199 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RN7SL665P-201ENST00000578793 300 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 AC090510.3-201ENST00000615831 821 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 FUCA1P1-201ENST00000374476 1351 ntBASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms