Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.8
CSMD3Q7Z407 SARS-202ENST00000369923 1882 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 AC084262.1-201ENST00000567818 751 ntBASIC10.02□□□□□ -0.81
CSMD3Q7Z407 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 STX3-207ENST00000633708 3111 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ALG1L3P-201ENST00000503331 765 ntBASIC10.02□□□□□ -0.81
CSMD3Q7Z407 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 PTGER4P2-201ENST00000328411 252 ntBASIC10.02□□□□□ -0.81
CSMD3Q7Z407 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 PTGER4P3-201ENST00000458150 252 ntBASIC10.02□□□□□ -0.81
CSMD3Q7Z407 RN7SL147P-201ENST00000487345 298 ntBASIC10.02□□□□□ -0.81
CSMD3Q7Z407 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
CSMD3Q7Z407 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 ERP29P1-201ENST00000442902 706 ntBASIC10.01□□□□□ -0.81
CSMD3Q7Z407 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 SCARNA12-201ENST00000459155 270 ntBASIC10.01□□□□□ -0.81
CSMD3Q7Z407 RNA5SP406-201ENST00000516106 112 ntBASIC10.01□□□□□ -0.81
CSMD3Q7Z407 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
CSMD3Q7Z407 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC10.01□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms