Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.3□□□□□ -0.28
SCN1BQ07699 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.3□□□□□ -0.28
SCN1BQ07699 AC022447.6-201ENST00000515522 438 ntBASIC13.3□□□□□ -0.28
SCN1BQ07699 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.3□□□□□ -0.28
SCN1BQ07699 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 SNHG9-202ENST00000564014 471 ntBASIC13.3□□□□□ -0.28
SCN1BQ07699 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 LITAF-210ENST00000571976 548 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 LITAF-214ENST00000574703 486 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
SCN1BQ07699 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SCN1BQ07699 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.3□□□□□ -0.28
SCN1BQ07699 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 AC012508.2-201ENST00000567613 1472 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 TCAM1P-207ENST00000485295 1537 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 AC007787.1-201ENST00000588095 1583 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.29□□□□□ -0.28
SCN1BQ07699 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
SCN1BQ07699 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.29□□□□□ -0.28
SCN1BQ07699 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.29□□□□□ -0.28
SCN1BQ07699 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 SPDYE14P-201ENST00000442619 822 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 AC023141.5-201ENST00000458585 616 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC13.29□□□□□ -0.28
SCN1BQ07699 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.29□□□□□ -0.28
SCN1BQ07699 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 HNRNPUP1-201ENST00000554987 333 ntBASIC13.29□□□□□ -0.28
SCN1BQ07699 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC13.29□□□□□ -0.28
SCN1BQ07699 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SCN1BQ07699 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.29□□□□□ -0.28
SCN1BQ07699 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 248.7 ms