Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.63■□□□□ 0.09
LHX1P48742 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.63■□□□□ 0.09
LHX1P48742 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LHX1P48742 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
LHX1P48742 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.63■□□□□ 0.09
LHX1P48742 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
LHX1P48742 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 AC006504.5-208ENST00000588784 2401 ntBASIC15.62■□□□□ 0.09
LHX1P48742 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LHX1P48742 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LHX1P48742 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LHX1P48742 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
LHX1P48742 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
LHX1P48742 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 AC011742.3-201ENST00000439053 820 ntBASIC15.62■□□□□ 0.09
LHX1P48742 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.62■□□□□ 0.09
LHX1P48742 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.62■□□□□ 0.09
LHX1P48742 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
LHX1P48742 AL139099.5-201ENST00000635274 300 ntBASIC15.62■□□□□ 0.09
LHX1P48742 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 AC144522.1-201ENST00000625111 1658 ntBASIC15.62■□□□□ 0.09
LHX1P48742 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LHX1P48742 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.62■□□□□ 0.09
LHX1P48742 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
LHX1P48742 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LHX1P48742 FAM90A7P-201ENST00000382628 1395 ntBASIC15.62■□□□□ 0.09
LHX1P48742 FAM90A23P-201ENST00000400136 1395 ntBASIC15.62■□□□□ 0.09
LHX1P48742 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 MTHFR-210ENST00000641407 2387 ntBASIC15.61■□□□□ 0.09
LHX1P48742 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
LHX1P48742 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.61■□□□□ 0.09
LHX1P48742 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.61■□□□□ 0.09
LHX1P48742 SCARNA21-201ENST00000517026 139 ntBASIC15.61■□□□□ 0.09
LHX1P48742 AC022217.1-201ENST00000521069 738 ntBASIC15.61■□□□□ 0.09
LHX1P48742 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.61■□□□□ 0.09
LHX1P48742 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 NDUFV2P1-201ENST00000596415 907 ntBASIC15.61■□□□□ 0.09
LHX1P48742 AL132994.2-201ENST00000603120 687 ntBASIC15.61■□□□□ 0.09
LHX1P48742 AC100757.4-201ENST00000626934 759 ntBASIC15.61■□□□□ 0.09
LHX1P48742 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 TMBIM7P-202ENST00000641474 1516 ntBASIC15.61■□□□□ 0.09
LHX1P48742 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.61■□□□□ 0.09
LHX1P48742 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.61■□□□□ 0.09
LHX1P48742 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.61■□□□□ 0.09
LHX1P48742 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LHX1P48742 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.6■□□□□ 0.09
LHX1P48742 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms