Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 AC006372.4-201ENST00000624122 1543 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 MROH4P-201ENST00000431302 1578 ntBASIC14.55□□□□□ -0.08
CXCL12P48061 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.55□□□□□ -0.08
CXCL12P48061 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CXCL12P48061 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.54□□□□□ -0.08
CXCL12P48061 MIR645-201ENST00000385283 94 ntBASIC14.54□□□□□ -0.08
CXCL12P48061 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CXCL12P48061 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.54□□□□□ -0.08
CXCL12P48061 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 AC055811.3-201ENST00000584952 686 ntBASIC14.54□□□□□ -0.08
CXCL12P48061 AC148477.9-201ENST00000623974 539 ntBASIC14.54□□□□□ -0.08
CXCL12P48061 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.54□□□□□ -0.08
CXCL12P48061 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 AC023024.2-201ENST00000623561 1993 ntBASIC14.54□□□□□ -0.08
CXCL12P48061 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CXCL12P48061 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CXCL12P48061 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CXCL12P48061 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL12P48061 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
CXCL12P48061 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL12P48061 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL12P48061 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.53□□□□□ -0.08
CXCL12P48061 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 LINC01101-201ENST00000622953 1884 ntBASIC14.53□□□□□ -0.08
CXCL12P48061 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.53□□□□□ -0.08
CXCL12P48061 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.53□□□□□ -0.08
CXCL12P48061 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CXCL12P48061 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 CTBP2P8-201ENST00000422584 1330 ntBASIC14.53□□□□□ -0.08
CXCL12P48061 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.53□□□□□ -0.08
CXCL12P48061 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.53□□□□□ -0.08
CXCL12P48061 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.53□□□□□ -0.08
CXCL12P48061 RN7SL23P-201ENST00000484055 275 ntBASIC14.53□□□□□ -0.08
CXCL12P48061 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 AC226150.1-201ENST00000544259 466 ntBASIC14.53□□□□□ -0.08
CXCL12P48061 RN7SL665P-201ENST00000578793 300 ntBASIC14.53□□□□□ -0.08
CXCL12P48061 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CXCL12P48061 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL12P48061 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CXCL12P48061 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CXCL12P48061 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL12P48061 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL12P48061 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms