Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 OR10N1P-201ENST00000392758 869 ntBASIC23.99■■□□□ 1.43
CUX1P39880 AL512599.1-201ENST00000430724 685 ntBASIC23.99■■□□□ 1.43
CUX1P39880 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC23.99■■□□□ 1.43
CUX1P39880 AC090136.2-201ENST00000517809 420 ntBASIC23.99■■□□□ 1.43
CUX1P39880 AC087203.1-201ENST00000532111 1181 ntBASIC23.99■■□□□ 1.43
CUX1P39880 MIR5001-201ENST00000580185 100 ntBASIC23.99■■□□□ 1.43
CUX1P39880 AL009176.1-201ENST00000607876 650 ntBASIC23.99■■□□□ 1.43
CUX1P39880 AC026336.4-201ENST00000624565 1050 ntBASIC23.99■■□□□ 1.43
CUX1P39880 MME-218ENST00000625667 363 ntTSL 5 BASIC23.99■■□□□ 1.43
CUX1P39880 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC23.99■■□□□ 1.43
CUX1P39880 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CUX1P39880 AMT-256ENST00000638063 1783 ntTSL 5 BASIC23.99■■□□□ 1.43
CUX1P39880 AGAP7P-201ENST00000582299 2062 ntBASIC23.99■■□□□ 1.43
CUX1P39880 AGAP14-201ENST00000624701 2060 ntBASIC23.99■■□□□ 1.43
CUX1P39880 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
CUX1P39880 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC23.98■■□□□ 1.43
CUX1P39880 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC23.98■■□□□ 1.43
CUX1P39880 RN7SL147P-201ENST00000487345 298 ntBASIC23.98■■□□□ 1.43
CUX1P39880 RN7SL375P-201ENST00000492442 298 ntBASIC23.98■■□□□ 1.43
CUX1P39880 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC23.98■■□□□ 1.43
CUX1P39880 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC23.98■■□□□ 1.43
CUX1P39880 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC23.98■■□□□ 1.43
CUX1P39880 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC23.98■■□□□ 1.43
CUX1P39880 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC23.98■■□□□ 1.43
CUX1P39880 AC138761.6-201ENST00000583997 1423 ntBASIC23.98■■□□□ 1.43
CUX1P39880 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CUX1P39880 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
CUX1P39880 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
CUX1P39880 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
CUX1P39880 PIFO-201ENST00000369737 746 ntTSL 2 BASIC23.97■■□□□ 1.43
CUX1P39880 PSAT1P2-201ENST00000426107 972 ntBASIC23.97■■□□□ 1.43
CUX1P39880 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC23.97■■□□□ 1.43
CUX1P39880 AC008026.2-201ENST00000495438 348 ntBASIC23.97■■□□□ 1.43
CUX1P39880 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC23.97■■□□□ 1.43
CUX1P39880 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC23.97■■□□□ 1.43
CUX1P39880 AC148477.9-201ENST00000623974 539 ntBASIC23.97■■□□□ 1.43
CUX1P39880 CASP16P-204ENST00000635032 809 ntBASIC23.97■■□□□ 1.43
CUX1P39880 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC23.97■■□□□ 1.43
CUX1P39880 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.97■■□□□ 1.43
CUX1P39880 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
CUX1P39880 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC23.96■■□□□ 1.43
CUX1P39880 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CUX1P39880 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 AC022080.1-201ENST00000366255 781 ntBASIC23.96■■□□□ 1.43
CUX1P39880 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CUX1P39880 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC23.96■■□□□ 1.43
CUX1P39880 KRT18P4-201ENST00000422599 1288 ntBASIC23.96■■□□□ 1.43
CUX1P39880 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC23.96■■□□□ 1.43
CUX1P39880 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CUX1P39880 SLC25A15P3-201ENST00000505530 290 ntBASIC23.96■■□□□ 1.43
CUX1P39880 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
CUX1P39880 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC23.96■■□□□ 1.43
CUX1P39880 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 AL359091.4-201ENST00000610052 409 ntBASIC23.96■■□□□ 1.43
CUX1P39880 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC23.96■■□□□ 1.43
CUX1P39880 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC23.96■■□□□ 1.43
CUX1P39880 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
CUX1P39880 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms