Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX2P35548 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX2P35548 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
MSX2P35548 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
MSX2P35548 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.21□□□□□ -0.14
MSX2P35548 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX2P35548 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX2P35548 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
MSX2P35548 AC072061.1-201ENST00000569710 2234 ntBASIC14.21□□□□□ -0.14
MSX2P35548 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX2P35548 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX2P35548 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX2P35548 AL031595.1-201ENST00000623969 4709 ntBASIC14.2□□□□□ -0.14
MSX2P35548 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX2P35548 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
MSX2P35548 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
MSX2P35548 MCCD1P2-201ENST00000423228 335 ntBASIC14.2□□□□□ -0.14
MSX2P35548 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC14.2□□□□□ -0.14
MSX2P35548 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.2□□□□□ -0.14
MSX2P35548 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.2□□□□□ -0.14
MSX2P35548 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX2P35548 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 C20orf181-201ENST00000623918 480 ntBASIC14.2□□□□□ -0.14
MSX2P35548 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
MSX2P35548 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
MSX2P35548 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX2P35548 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX2P35548 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
MSX2P35548 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 MIR940-201ENST00000401276 94 ntBASIC14.19□□□□□ -0.14
MSX2P35548 RPL37AP1-201ENST00000412502 279 ntBASIC14.19□□□□□ -0.14
MSX2P35548 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 HTR5BP-201ENST00000430851 1154 ntBASIC14.19□□□□□ -0.14
MSX2P35548 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX2P35548 ALG1L5P-201ENST00000482043 771 ntBASIC14.19□□□□□ -0.14
MSX2P35548 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX2P35548 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.19□□□□□ -0.14
MSX2P35548 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.19□□□□□ -0.14
MSX2P35548 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
MSX2P35548 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX2P35548 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
MSX2P35548 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms