Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 AL353637.1-201ENST00000451571 732 ntBASIC16.59■□□□□ 0.25
COL20A1Q9P218 AC234782.1-201ENST00000451950 919 ntBASIC16.59■□□□□ 0.25
COL20A1Q9P218 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 PRKXP1-201ENST00000561423 1122 ntBASIC16.59■□□□□ 0.25
COL20A1Q9P218 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 AC007718.1-201ENST00000621078 280 ntBASIC16.59■□□□□ 0.25
COL20A1Q9P218 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.59■□□□□ 0.25
COL20A1Q9P218 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL20A1Q9P218 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL20A1Q9P218 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL20A1Q9P218 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.58■□□□□ 0.25
COL20A1Q9P218 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL20A1Q9P218 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
COL20A1Q9P218 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.58■□□□□ 0.25
COL20A1Q9P218 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.58■□□□□ 0.25
COL20A1Q9P218 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL20A1Q9P218 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL20A1Q9P218 TNRC18P2-201ENST00000417666 2714 ntBASIC16.58■□□□□ 0.25
COL20A1Q9P218 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 EEF1DP6-201ENST00000449232 372 ntBASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC006453.1-201ENST00000636037 1257 ntBASIC16.58■□□□□ 0.24
COL20A1Q9P218 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL20A1Q9P218 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL20A1Q9P218 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL20A1Q9P218 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.57■□□□□ 0.24
COL20A1Q9P218 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms