Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 CICP6-201ENST00000457191 2729 ntBASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SHANK3Q9BYB0 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC004554.1-201ENST00000422830 1468 ntBASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 MIR1301-201ENST00000408518 82 ntBASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC023141.7-201ENST00000430646 407 ntBASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC083801.1-201ENST00000491689 358 ntBASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 PMEL-214ENST00000550447 901 ntTSL 3 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 APOC1-209ENST00000592885 562 ntTSL 3 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SHANK3Q9BYB0 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 GAS7-216ENST00000583882 553 ntTSL 5 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 AL031673.1-201ENST00000611460 466 ntBASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 AC026336.4-201ENST00000624565 1050 ntBASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SHANK3Q9BYB0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 NME6-208ENST00000435684 599 ntTSL 2 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 RPL3P5-201ENST00000441645 1232 ntBASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 RN7SL147P-201ENST00000487345 298 ntBASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 IGHEP2-201ENST00000519308 1256 ntBASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AC006548.2-201ENST00000605217 529 ntBASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHANK3Q9BYB0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHANK3Q9BYB0 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms