Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AC026954.1-201ENST00000429771 1293 ntBASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AC119751.2-201ENST00000504529 210 ntBASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AL138725.1-201ENST00000407347 1314 ntBASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 LINC02228-204ENST00000642115 2962 ntBASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.78□□□□□ -0.2
NUP54Q7Z3B4 CICP14-201ENST00000629111 2732 ntBASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
NUP54Q7Z3B4 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SALL4P5-201ENST00000419001 1760 ntBASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 COX5BP1-201ENST00000507622 393 ntBASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 AP000593.2-201ENST00000542775 1433 ntBASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 AC106820.3-201ENST00000561653 397 ntBASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 OR10B1P-201ENST00000601666 907 ntBASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
NUP54Q7Z3B4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC003102.2-201ENST00000589195 1469 ntBASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
NUP54Q7Z3B4 AC099336.1-201ENST00000417053 1171 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms