Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 MPI-203ENST00000535694 1523 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 PRSS3P1-201ENST00000503996 742 ntBASIC19.05■□□□□ 0.64
USP54Q70EL1 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 AC008972.2-201ENST00000606587 494 ntBASIC19.05■□□□□ 0.64
USP54Q70EL1 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
USP54Q70EL1 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP54Q70EL1 HCG27-204ENST00000424675 895 ntTSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC19.05■□□□□ 0.64
USP54Q70EL1 THY1-209ENST00000580275 578 ntTSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC19.05■□□□□ 0.64
USP54Q70EL1 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
USP54Q70EL1 AC002472.4-201ENST00000641915 272 ntBASIC19.05■□□□□ 0.64
USP54Q70EL1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
USP54Q70EL1 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC19.04■□□□□ 0.64
USP54Q70EL1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC19.04■□□□□ 0.64
USP54Q70EL1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
USP54Q70EL1 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.04■□□□□ 0.64
USP54Q70EL1 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 MIR4265-201ENST00000582152 99 ntBASIC19.04■□□□□ 0.64
USP54Q70EL1 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC19.04■□□□□ 0.64
USP54Q70EL1 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP54Q70EL1 AC015909.5-201ENST00000624336 2266 ntBASIC19.04■□□□□ 0.64
USP54Q70EL1 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
USP54Q70EL1 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC19.03■□□□□ 0.64
USP54Q70EL1 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 SURF4-203ENST00000371991 715 ntTSL 3 BASIC19.03■□□□□ 0.64
USP54Q70EL1 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC19.03■□□□□ 0.64
USP54Q70EL1 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
USP54Q70EL1 AC026470.1-201ENST00000478038 846 ntBASIC19.03■□□□□ 0.64
USP54Q70EL1 GOLGA2P8-201ENST00000505201 779 ntBASIC19.03■□□□□ 0.64
USP54Q70EL1 HINT1-205ENST00000508488 703 ntTSL 2 BASIC19.03■□□□□ 0.64
USP54Q70EL1 GAS7-216ENST00000583882 553 ntTSL 5 BASIC19.03■□□□□ 0.64
USP54Q70EL1 AL136982.5-201ENST00000605222 294 ntBASIC19.03■□□□□ 0.64
USP54Q70EL1 MIR6746-201ENST00000620971 63 ntBASIC19.03■□□□□ 0.64
USP54Q70EL1 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC19.03■□□□□ 0.64
USP54Q70EL1 AL139158.3-201ENST00000641212 1562 ntBASIC19.03■□□□□ 0.64
USP54Q70EL1 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP54Q70EL1 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC19.02■□□□□ 0.64
USP54Q70EL1 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC19.02■□□□□ 0.64
USP54Q70EL1 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC19.02■□□□□ 0.64
USP54Q70EL1 AC022080.1-201ENST00000366255 781 ntBASIC19.02■□□□□ 0.64
USP54Q70EL1 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC19.02■□□□□ 0.64
USP54Q70EL1 AC068760.1-201ENST00000493579 1953 ntBASIC19.02■□□□□ 0.64
USP54Q70EL1 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC19.02■□□□□ 0.64
USP54Q70EL1 AL049840.2-201ENST00000602722 535 ntBASIC19.02■□□□□ 0.64
USP54Q70EL1 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC19.02■□□□□ 0.64
USP54Q70EL1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP54Q70EL1 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms