Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
USP39Q53GS9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
USP39Q53GS9 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
USP39Q53GS9 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 ACTG1P2-201ENST00000415776 1125 ntBASIC15.1■□□□□ 0.01
USP39Q53GS9 ACTG1P11-201ENST00000425411 1125 ntBASIC15.1■□□□□ 0.01
USP39Q53GS9 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.1■□□□□ 0.01
USP39Q53GS9 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 PRKXP1-201ENST00000561423 1122 ntBASIC15.1■□□□□ 0.01
USP39Q53GS9 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
USP39Q53GS9 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.1■□□□□ 0.01
USP39Q53GS9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
USP39Q53GS9 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 AP000593.2-201ENST00000542775 1433 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AGAP7P-201ENST00000582299 2062 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 AGAP14-201ENST00000624701 2060 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.09■□□□□ 0.01
USP39Q53GS9 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
USP39Q53GS9 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.09■□□□□ 0.01
USP39Q53GS9 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.09■□□□□ 0.01
USP39Q53GS9 MARK2P5-201ENST00000507649 634 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 DUX4L47-201ENST00000566374 394 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
USP39Q53GS9 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 CICP24-201ENST00000605464 2705 ntBASIC15.09■□□□□ 0.01
USP39Q53GS9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
USP39Q53GS9 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
USP39Q53GS9 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.09■□□□□ 0.01
USP39Q53GS9 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.09■□□□□ 0.01
USP39Q53GS9 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms