Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
PCDH1Q08174 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.33□□□□□ -0.11
PCDH1Q08174 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
PCDH1Q08174 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
PCDH1Q08174 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.33□□□□□ -0.12
PCDH1Q08174 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.33□□□□□ -0.12
PCDH1Q08174 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.33□□□□□ -0.12
PCDH1Q08174 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 CNN2P8-201ENST00000421872 913 ntBASIC14.33□□□□□ -0.12
PCDH1Q08174 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.33□□□□□ -0.12
PCDH1Q08174 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.33□□□□□ -0.12
PCDH1Q08174 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.33□□□□□ -0.12
PCDH1Q08174 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 BTNL10-201ENST00000595971 695 ntBASIC14.33□□□□□ -0.12
PCDH1Q08174 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 AL136172.1-201ENST00000598590 1394 ntBASIC14.33□□□□□ -0.12
PCDH1Q08174 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.33□□□□□ -0.12
PCDH1Q08174 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
PCDH1Q08174 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PCDH1Q08174 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.32□□□□□ -0.12
PCDH1Q08174 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 AC139712.1-201ENST00000378256 1875 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 INE2-201ENST00000630399 1874 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 TPM3P8-201ENST00000330554 643 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PCDH1Q08174 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 AL512384.1-201ENST00000406683 331 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 RN7SL692P-201ENST00000464677 288 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 AL391280.1-201ENST00000506969 1062 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.32□□□□□ -0.12
PCDH1Q08174 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 AC008735.3-201ENST00000596646 500 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 AL022328.1-201ENST00000610050 478 ntBASIC14.32□□□□□ -0.12
PCDH1Q08174 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
PCDH1Q08174 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
PCDH1Q08174 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.32□□□□□ -0.12
PCDH1Q08174 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
PCDH1Q08174 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms