Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 KRT8P38-201ENST00000441370 1430 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 RBP4-203ENST00000371469 814 ntTSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC10.27□□□□□ -0.77
PRKDCP78527 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC10.27□□□□□ -0.77
PRKDCP78527 EEF1DP2-201ENST00000433698 843 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC10.27□□□□□ -0.77
PRKDCP78527 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC10.27□□□□□ -0.77
PRKDCP78527 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC10.27□□□□□ -0.77
PRKDCP78527 AACSP1-202ENST00000521412 1095 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC10.27□□□□□ -0.77
PRKDCP78527 AC005332.2-201ENST00000590010 930 ntBASIC10.27□□□□□ -0.77
PRKDCP78527 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC10.27□□□□□ -0.77
PRKDCP78527 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC10.27□□□□□ -0.77
PRKDCP78527 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
PRKDCP78527 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 NALT1-202ENST00000450304 437 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 RN7SL684P-201ENST00000465665 294 ntBASIC10.26□□□□□ -0.77
PRKDCP78527 CCND3P2-201ENST00000579393 537 ntBASIC10.26□□□□□ -0.77
PRKDCP78527 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
PRKDCP78527 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC10.26□□□□□ -0.77
PRKDCP78527 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 AC103724.2-201ENST00000520355 476 ntBASIC10.26□□□□□ -0.77
PRKDCP78527 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC10.26□□□□□ -0.77
PRKDCP78527 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC10.26□□□□□ -0.77
PRKDCP78527 RFNG-202ENST00000429557 994 ntTSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
PRKDCP78527 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC10.26□□□□□ -0.77
PRKDCP78527 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 ASS1P1-201ENST00000402854 1237 ntBASIC10.26□□□□□ -0.77
PRKDCP78527 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC10.26□□□□□ -0.77
PRKDCP78527 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC10.26□□□□□ -0.77
PRKDCP78527 HNRNPA1P72-201ENST00000529511 967 ntBASIC10.26□□□□□ -0.77
PRKDCP78527 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
PRKDCP78527 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC10.26□□□□□ -0.77
PRKDCP78527 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC10.25□□□□□ -0.77
PRKDCP78527 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
PRKDCP78527 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms