Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
CDH6P55285 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CDH6P55285 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CDH6P55285 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CDH6P55285 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH6P55285 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH6P55285 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH6P55285 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH6P55285 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.47■□□□□ 0.07
CDH6P55285 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 LINC02084-201ENST00000606069 1096 ntBASIC15.47■□□□□ 0.07
CDH6P55285 AC138696.2-201ENST00000607376 223 ntBASIC15.47■□□□□ 0.07
CDH6P55285 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH6P55285 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
CDH6P55285 AC138466.3-201ENST00000619983 221 ntBASIC15.47■□□□□ 0.07
CDH6P55285 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 INE2-201ENST00000630399 1874 ntBASIC15.47■□□□□ 0.07
CDH6P55285 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH6P55285 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH6P55285 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 FKBP4P6-201ENST00000457486 1332 ntBASIC15.46■□□□□ 0.07
CDH6P55285 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 MRPL37P1-201ENST00000592451 1337 ntBASIC15.46■□□□□ 0.07
CDH6P55285 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH6P55285 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH6P55285 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.46■□□□□ 0.07
CDH6P55285 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 NME2P1-201ENST00000426182 414 ntBASIC15.46■□□□□ 0.07
CDH6P55285 TTTY23B-201ENST00000442790 549 ntBASIC15.46■□□□□ 0.07
CDH6P55285 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 FTLP10-202ENST00000505798 471 ntBASIC15.46■□□□□ 0.07
CDH6P55285 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.46■□□□□ 0.07
CDH6P55285 SLC25A47P1-201ENST00000531577 414 ntBASIC15.46■□□□□ 0.07
CDH6P55285 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH6P55285 AC132938.2-201ENST00000579188 680 ntBASIC15.46■□□□□ 0.07
CDH6P55285 GNRHR2-203ENST00000581100 1187 ntBASIC15.46■□□□□ 0.07
CDH6P55285 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CDH6P55285 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 AL591163.1-201ENST00000641757 987 ntBASIC15.46■□□□□ 0.07
CDH6P55285 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CDH6P55285 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
CDH6P55285 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH6P55285 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH6P55285 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.46■□□□□ 0.06
CDH6P55285 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.46■□□□□ 0.06
CDH6P55285 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH6P55285 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.46■□□□□ 0.06
CDH6P55285 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH6P55285 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
CDH6P55285 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
CDH6P55285 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH6P55285 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CDH6P55285 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH6P55285 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH6P55285 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms