Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
MSH6P52701 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSH6P52701 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSH6P52701 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 AC106827.1-201ENST00000366454 431 ntBASIC20.1■□□□□ 0.81
MSH6P52701 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 CHCHD2P2-201ENST00000503744 321 ntBASIC20.1■□□□□ 0.81
MSH6P52701 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC20.1■□□□□ 0.81
MSH6P52701 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC20.1■□□□□ 0.81
MSH6P52701 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC20.1■□□□□ 0.81
MSH6P52701 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 WASH3P-207ENST00000560956 1394 ntBASIC20.1■□□□□ 0.81
MSH6P52701 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
MSH6P52701 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 AC105250.1-201ENST00000509378 2057 ntBASIC20.1■□□□□ 0.81
MSH6P52701 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC20.1■□□□□ 0.81
MSH6P52701 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSH6P52701 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
MSH6P52701 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 SNX15-201ENST00000352068 771 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 RPS23-207ENST00000511844 530 ntTSL 2 BASIC20.09■□□□□ 0.81
MSH6P52701 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC20.09■□□□□ 0.81
MSH6P52701 KRT8P2-201ENST00000556193 944 ntBASIC20.09■□□□□ 0.81
MSH6P52701 AL590235.1-201ENST00000564650 861 ntBASIC20.09■□□□□ 0.81
MSH6P52701 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 AL133467.4-201ENST00000602953 725 ntBASIC20.09■□□□□ 0.81
MSH6P52701 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
MSH6P52701 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 BRD7P5-201ENST00000299197 1822 ntBASIC20.09■□□□□ 0.81
MSH6P52701 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC20.09■□□□□ 0.81
MSH6P52701 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
MSH6P52701 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC20.09■□□□□ 0.81
MSH6P52701 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSH6P52701 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC20.09■□□□□ 0.81
MSH6P52701 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC20.09■□□□□ 0.81
MSH6P52701 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC20.09■□□□□ 0.81
MSH6P52701 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC20.08■□□□□ 0.81
MSH6P52701 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC20.08■□□□□ 0.81
MSH6P52701 RN7SL288P-201ENST00000490496 291 ntBASIC20.08■□□□□ 0.81
MSH6P52701 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC20.08■□□□□ 0.81
MSH6P52701 BCL2L12P1-201ENST00000508390 733 ntBASIC20.08■□□□□ 0.81
MSH6P52701 KNOP1P1-201ENST00000542108 989 ntBASIC20.08■□□□□ 0.81
MSH6P52701 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC20.08■□□□□ 0.81
MSH6P52701 COX5A-205ENST00000568517 582 ntTSL 3 BASIC20.08■□□□□ 0.81
MSH6P52701 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC20.08■□□□□ 0.81
MSH6P52701 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
MSH6P52701 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
MSH6P52701 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
MSH6P52701 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.81
MSH6P52701 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 AGGF1P1-201ENST00000509500 2073 ntBASIC20.08■□□□□ 0.8
MSH6P52701 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC20.08■□□□□ 0.8
MSH6P52701 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
MSH6P52701 WASH7P-201ENST00000488147 1351 ntBASIC20.08■□□□□ 0.8
MSH6P52701 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms