Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 AC002472.2-201ENST00000442739 958 ntBASIC12.75□□□□□ -0.37
CCL1P22362 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC12.75□□□□□ -0.37
CCL1P22362 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 AL391280.1-201ENST00000506969 1062 ntBASIC12.75□□□□□ -0.37
CCL1P22362 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 PTP4A1P2-201ENST00000546033 454 ntBASIC12.75□□□□□ -0.37
CCL1P22362 TP53TG3HP-202ENST00000569755 579 ntBASIC12.75□□□□□ -0.37
CCL1P22362 MIR5189-201ENST00000577370 114 ntBASIC12.75□□□□□ -0.37
CCL1P22362 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC12.75□□□□□ -0.37
CCL1P22362 AL096865.1-201ENST00000606796 927 ntBASIC12.75□□□□□ -0.37
CCL1P22362 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC12.75□□□□□ -0.37
CCL1P22362 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.75□□□□□ -0.37
CCL1P22362 AC090643.2-201ENST00000623442 2029 ntBASIC12.75□□□□□ -0.37
CCL1P22362 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.75□□□□□ -0.37
CCL1P22362 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CCL1P22362 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CCL1P22362 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CCL1P22362 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC12.74□□□□□ -0.37
CCL1P22362 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.74□□□□□ -0.37
CCL1P22362 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.74□□□□□ -0.37
CCL1P22362 ARSEP1-201ENST00000420443 635 ntBASIC12.74□□□□□ -0.37
CCL1P22362 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.74□□□□□ -0.37
CCL1P22362 BCRP1-201ENST00000444246 691 ntBASIC12.74□□□□□ -0.37
CCL1P22362 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.74□□□□□ -0.37
CCL1P22362 AC068587.3-201ENST00000526613 355 ntBASIC12.74□□□□□ -0.37
CCL1P22362 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.74□□□□□ -0.37
CCL1P22362 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.74□□□□□ -0.37
CCL1P22362 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.74□□□□□ -0.37
CCL1P22362 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
CCL1P22362 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC12.74□□□□□ -0.37
CCL1P22362 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.73□□□□□ -0.37
CCL1P22362 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CCL1P22362 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCL1P22362 KRT8P28-201ENST00000433288 1390 ntBASIC12.73□□□□□ -0.37
CCL1P22362 TUBB8P4-201ENST00000511806 1324 ntBASIC12.73□□□□□ -0.37
CCL1P22362 AC064801.2-201ENST00000625052 1303 ntBASIC12.73□□□□□ -0.37
CCL1P22362 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms