Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 AC073210.1-201ENST00000414799 232 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC14.87□□□□□ -0.03
COL6A3P12111 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC14.87□□□□□ -0.03
COL6A3P12111 AC017100.1-201ENST00000565978 1169 ntBASIC14.87□□□□□ -0.03
COL6A3P12111 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL6A3P12111 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.87□□□□□ -0.03
COL6A3P12111 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
COL6A3P12111 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A3P12111 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 AC139712.1-201ENST00000378256 1875 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
COL6A3P12111 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A3P12111 CCND3P1-201ENST00000438347 580 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 LILRP2-202ENST00000413572 1383 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 AC012513.2-201ENST00000441511 1137 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 ST13P19-201ENST00000442505 1124 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 PRSS3P1-201ENST00000503996 742 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 IGHV7-56-201ENST00000518372 351 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 AC005332.2-201ENST00000590010 930 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 AL049840.2-201ENST00000602722 535 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC14.86□□□□□ -0.03
COL6A3P12111 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL6A3P12111 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
COL6A3P12111 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A3P12111 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 RN7SL794P-201ENST00000469816 280 ntBASIC14.85□□□□□ -0.03
COL6A3P12111 FOS-205ENST00000555242 629 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A3P12111 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 POLR3DP1-201ENST00000398689 1176 ntBASIC14.85□□□□□ -0.03
COL6A3P12111 GAPDHP65-201ENST00000425487 1006 ntBASIC14.85□□□□□ -0.03
COL6A3P12111 PARVG-208ENST00000466375 820 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC14.85□□□□□ -0.03
COL6A3P12111 MIR6871-201ENST00000613433 56 ntBASIC14.85□□□□□ -0.03
COL6A3P12111 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.85□□□□□ -0.03
COL6A3P12111 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 TSACC-203ENST00000368253 512 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC14.85□□□□□ -0.03
COL6A3P12111 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC14.85□□□□□ -0.03
COL6A3P12111 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL6A3P12111 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.84□□□□□ -0.03
COL6A3P12111 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL6A3P12111 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL6A3P12111 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 SRSF9P1-201ENST00000399149 530 ntBASIC14.84□□□□□ -0.03
COL6A3P12111 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL6A3P12111 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms