Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A1P12109 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 AC018638.5-201ENST00000450885 754 ntBASIC16.15■□□□□ 0.18
COL6A1P12109 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC16.15■□□□□ 0.18
COL6A1P12109 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.15■□□□□ 0.18
COL6A1P12109 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 AC025183.3-201ENST00000623526 1482 ntBASIC16.15■□□□□ 0.18
COL6A1P12109 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.15■□□□□ 0.18
COL6A1P12109 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.15■□□□□ 0.18
COL6A1P12109 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL6A1P12109 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
COL6A1P12109 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.14■□□□□ 0.18
COL6A1P12109 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC092850.2-201ENST00000623821 2697 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 ZNF436-AS1-201ENST00000335648 2547 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL6A1P12109 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 PRAL-201ENST00000624952 3286 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
COL6A1P12109 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC073869.2-201ENST00000417338 1026 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A1P12109 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 AP005212.2-201ENST00000584979 510 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 MME-218ENST00000625667 363 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.14■□□□□ 0.17
COL6A1P12109 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 AC126365.1-201ENST00000578585 1514 ntBASIC16.14■□□□□ 0.17
COL6A1P12109 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL6A1P12109 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A1P12109 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.14■□□□□ 0.17
COL6A1P12109 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A1P12109 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A1P12109 WASH3P-207ENST00000560956 1394 ntBASIC16.13■□□□□ 0.17
COL6A1P12109 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A1P12109 MROH4P-201ENST00000431302 1578 ntBASIC16.13■□□□□ 0.17
COL6A1P12109 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A1P12109 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms