Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 TPT1P11-201ENST00000458482 498 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 RN7SL277P-201ENST00000481521 288 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
COL6A5A8TX70 AC112694.1-202ENST00000540985 943 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 KRT8P2-201ENST00000556193 944 ntBASIC11.22□□□□□ -0.61
COL6A5A8TX70 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC11.22□□□□□ -0.61
COL6A5A8TX70 AC007952.5-201ENST00000572818 1486 ntBASIC11.21□□□□□ -0.61
COL6A5A8TX70 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 FLJ38576-201ENST00000623820 2459 ntBASIC11.21□□□□□ -0.61
COL6A5A8TX70 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 PPP1R2P10-201ENST00000393023 595 ntBASIC11.21□□□□□ -0.61
COL6A5A8TX70 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 RPL18AP16-201ENST00000424057 531 ntBASIC11.21□□□□□ -0.61
COL6A5A8TX70 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 ABCD1P3-201ENST00000562927 605 ntBASIC11.21□□□□□ -0.61
COL6A5A8TX70 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
COL6A5A8TX70 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
COL6A5A8TX70 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 MIR339-201ENST00000362153 94 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 U73169.1-201ENST00000395152 367 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 AL157823.1-201ENST00000403727 628 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 RNF7-205ENST00000480908 782 ntTSL 4 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 AL021707.6-201ENST00000609212 491 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 AC113385.2-201ENST00000614465 762 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC11.21□□□□□ -0.62
COL6A5A8TX70 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC11.21□□□□□ -0.62
COL6A5A8TX70 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
COL6A5A8TX70 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms