Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS29Q9UBQ0 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CLUHP2-201ENST00000426660 1303 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 RN7SKP230-201ENST00000365642 335 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CRB3P1-201ENST00000449338 276 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 MESTP3-201ENST00000503460 968 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 TDH-203ENST00000531764 1110 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 RN7SL48P-201ENST00000579283 293 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 AC138696.2-201ENST00000607376 223 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ENPP7P14-201ENST00000621765 1040 ntBASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS29Q9UBQ0 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 AP006294.1-201ENST00000415407 339 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 POM121L8P-201ENST00000417732 1281 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 POM121L9P-203ENST00000441984 1285 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 GCOM2-201ENST00000509133 1104 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 AC068587.3-201ENST00000526613 355 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 MIR5189-201ENST00000577370 114 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 AC010319.3-201ENST00000597028 470 ntBASIC14.25□□□□□ -0.13
VPS29Q9UBQ0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms