Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 LILRP1-201ENST00000444199 1370 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 SLC25A24P2-201ENST00000415059 510 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AC005077.2-201ENST00000449786 690 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 NDUFV2P1-201ENST00000596415 907 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AC068587.10-201ENST00000641210 219 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AC011840.2-201ENST00000563063 1520 ntBASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAIPQ9BWF2 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 SHC1P1-201ENST00000425230 1745 ntBASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AL161772.1-201ENST00000610494 4412 ntBASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 FAM58BP-201ENST00000439056 645 ntBASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 AP000845.1-201ENST00000581677 2131 ntBASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAIPQ9BWF2 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 TUBBP5-203ENST00000508529 1334 ntBASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAIPQ9BWF2 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms