Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AL627095.1-201ENST00000414775 321 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 AC026884.1-201ENST00000418296 457 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 PPP1R2P4-201ENST00000424051 595 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AP000920.1-201ENST00000531824 344 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC005274.1-201ENST00000623460 802 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 HNRNPABP1-201ENST00000406003 734 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 HNRNPA1P27-201ENST00000412087 955 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 RPS23-207ENST00000511844 530 ntTSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC12.63□□□□□ -0.39
COL12A1Q99715 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC12.63□□□□□ -0.39
COL12A1Q99715 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL12A1Q99715 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
COL12A1Q99715 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.63□□□□□ -0.39
COL12A1Q99715 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL12A1Q99715 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 CASK-202ENST00000378158 3848 ntTSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC12.62□□□□□ -0.39
COL12A1Q99715 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 KRT18P4-201ENST00000422599 1288 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.62□□□□□ -0.39
COL12A1Q99715 AC147876.1-201ENST00000504408 322 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC12.62□□□□□ -0.39
COL12A1Q99715 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 AC079331.1-201ENST00000623200 1200 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL12A1Q99715 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 SALL4P5-201ENST00000419001 1760 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 MIR645-201ENST00000385283 94 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL12A1Q99715 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL12A1Q99715 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC12.62□□□□□ -0.39
COL12A1Q99715 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC12.62□□□□□ -0.39
COL12A1Q99715 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC12.62□□□□□ -0.39
COL12A1Q99715 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL12A1Q99715 RN7SL530P-201ENST00000485097 298 ntBASIC12.62□□□□□ -0.39
COL12A1Q99715 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC12.62□□□□□ -0.39
COL12A1Q99715 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL12A1Q99715 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
COL12A1Q99715 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
COL12A1Q99715 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL12A1Q99715 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC12.61□□□□□ -0.39
COL12A1Q99715 B9D1-206ENST00000461069 923 ntTSL 2 BASIC12.61□□□□□ -0.39
COL12A1Q99715 RN7SL340P-201ENST00000470792 296 ntBASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms