Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC004066.1-201ENST00000502488 802 ntBASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 CLUHP6-201ENST00000580789 941 ntBASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC008735.3-201ENST00000596646 500 ntBASIC14.34□□□□□ -0.11
VMP1Q96GC9 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 BX539320.1-201ENST00000623759 877 ntBASIC14.34□□□□□ -0.11
VMP1Q96GC9 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 ST20-AS1-201ENST00000560255 4223 ntBASIC14.34□□□□□ -0.11
VMP1Q96GC9 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
VMP1Q96GC9 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
VMP1Q96GC9 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
VMP1Q96GC9 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.33□□□□□ -0.11
VMP1Q96GC9 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.33□□□□□ -0.11
VMP1Q96GC9 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VMP1Q96GC9 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AL359881.3-201ENST00000602640 1721 ntBASIC14.33□□□□□ -0.12
VMP1Q96GC9 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 ACKR1-201ENST00000368121 1240 ntBASIC14.33□□□□□ -0.12
VMP1Q96GC9 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 TMEM14DP-201ENST00000422205 345 ntBASIC14.33□□□□□ -0.12
VMP1Q96GC9 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VMP1Q96GC9 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AC068587.3-201ENST00000526613 355 ntBASIC14.33□□□□□ -0.12
VMP1Q96GC9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.33□□□□□ -0.12
VMP1Q96GC9 AC106886.1-201ENST00000568660 600 ntBASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms