Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.41■□□□□ 0.38
NEDD4P46934 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
NEDD4P46934 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.41■□□□□ 0.38
NEDD4P46934 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.41■□□□□ 0.38
NEDD4P46934 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.41■□□□□ 0.38
NEDD4P46934 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.41■□□□□ 0.38
NEDD4P46934 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.41■□□□□ 0.38
NEDD4P46934 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.41■□□□□ 0.38
NEDD4P46934 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.41■□□□□ 0.38
NEDD4P46934 AC008825.2-201ENST00000603374 718 ntBASIC17.41■□□□□ 0.38
NEDD4P46934 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.41■□□□□ 0.38
NEDD4P46934 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.41■□□□□ 0.38
NEDD4P46934 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NEDD4P46934 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
NEDD4P46934 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
NEDD4P46934 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
NEDD4P46934 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
NEDD4P46934 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.4■□□□□ 0.38
NEDD4P46934 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
NEDD4P46934 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
NEDD4P46934 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
NEDD4P46934 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.4■□□□□ 0.38
NEDD4P46934 AL645933.1-201ENST00000440087 609 ntBASIC17.4■□□□□ 0.38
NEDD4P46934 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
NEDD4P46934 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.4■□□□□ 0.38
NEDD4P46934 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.4■□□□□ 0.38
NEDD4P46934 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.4■□□□□ 0.38
NEDD4P46934 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
NEDD4P46934 AC104982.3-201ENST00000581995 514 ntBASIC17.4■□□□□ 0.38
NEDD4P46934 AC027601.3-201ENST00000622907 509 ntBASIC17.4■□□□□ 0.38
NEDD4P46934 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 AC139749.1-202ENST00000617529 3139 ntBASIC17.4■□□□□ 0.38
NEDD4P46934 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NEDD4P46934 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NEDD4P46934 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
NEDD4P46934 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.39■□□□□ 0.38
NEDD4P46934 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
NEDD4P46934 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
NEDD4P46934 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
NEDD4P46934 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.38
NEDD4P46934 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.39■□□□□ 0.38
NEDD4P46934 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.39■□□□□ 0.37
NEDD4P46934 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.39■□□□□ 0.37
NEDD4P46934 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 MYADML-201ENST00000474610 2147 ntBASIC17.39■□□□□ 0.37
NEDD4P46934 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.39■□□□□ 0.37
NEDD4P46934 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.39■□□□□ 0.37
NEDD4P46934 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.39■□□□□ 0.37
NEDD4P46934 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.39■□□□□ 0.37
NEDD4P46934 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 TPT1P11-201ENST00000458482 498 ntBASIC17.39■□□□□ 0.37
NEDD4P46934 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.39■□□□□ 0.37
NEDD4P46934 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.39■□□□□ 0.37
NEDD4P46934 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 Z98259.2-201ENST00000641583 609 ntBASIC17.39■□□□□ 0.37
NEDD4P46934 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.39■□□□□ 0.37
NEDD4P46934 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
NEDD4P46934 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.39■□□□□ 0.37
NEDD4P46934 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NEDD4P46934 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms