Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SPDYE19P-201ENST00000338590 713 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 COPE-202ENST00000349893 948 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 CALY-202ENST00000368555 783 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 SUN1-204ENST00000403868 978 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 GNAQP1-201ENST00000444815 1067 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 RN7SL399P-201ENST00000471648 279 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 DOC2GP-202ENST00000514950 1163 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC005225.4-201ENST00000557330 545 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 RARRES2P5-201ENST00000564013 466 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 AL035252.4-201ENST00000624174 288 ntBASIC11.4□□□□□ -0.58
HLA-DMBP28068 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC11.4□□□□□ -0.58
HLA-DMBP28068 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HLA-DMBP28068 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.4□□□□□ -0.59
HLA-DMBP28068 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DMBP28068 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC11.4□□□□□ -0.59
HLA-DMBP28068 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
HLA-DMBP28068 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.4□□□□□ -0.59
HLA-DMBP28068 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 SPDYE22P-201ENST00000582158 798 ntBASIC11.39□□□□□ -0.59
HLA-DMBP28068 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC11.39□□□□□ -0.59
HLA-DMBP28068 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 AC055811.4-201ENST00000624039 1754 ntBASIC11.39□□□□□ -0.59
HLA-DMBP28068 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HLA-DMBP28068 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms