Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NFKB1P19838 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NFKB1P19838 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NFKB1P19838 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NFKB1P19838 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NFKB1P19838 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 AC009093.2-202ENST00000620513 2079 ntBASIC15.13■□□□□ 0.01
NFKB1P19838 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 FAM197Y7-201ENST00000432892 766 ntBASIC15.13■□□□□ 0.01
NFKB1P19838 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 RNA5SP486-201ENST00000515961 83 ntBASIC15.13■□□□□ 0.01
NFKB1P19838 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.13■□□□□ 0.01
NFKB1P19838 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
NFKB1P19838 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
NFKB1P19838 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NFKB1P19838 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.13■□□□□ 0.01
NFKB1P19838 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NFKB1P19838 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NFKB1P19838 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.12■□□□□ 0.01
NFKB1P19838 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
NFKB1P19838 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.12■□□□□ 0.01
NFKB1P19838 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
NFKB1P19838 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 COX20P2-201ENST00000452636 358 ntBASIC15.12■□□□□ 0.01
NFKB1P19838 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.12■□□□□ 0.01
NFKB1P19838 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 AC106820.3-201ENST00000561653 397 ntBASIC15.12■□□□□ 0.01
NFKB1P19838 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC15.12■□□□□ 0.01
NFKB1P19838 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.12■□□□□ 0.01
NFKB1P19838 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NFKB1P19838 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NFKB1P19838 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms