Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 CTBP1-AS2-206ENST00000581398 5652 ntBASIC18.74■□□□□ 0.59
NPHP1O15259 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
NPHP1O15259 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPHP1O15259 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 AC244394.1-201ENST00000435000 1665 ntBASIC18.73■□□□□ 0.59
NPHP1O15259 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 MBLAC2-202ENST00000514906 1936 ntBASIC18.73■□□□□ 0.59
NPHP1O15259 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
NPHP1O15259 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.73■□□□□ 0.59
NPHP1O15259 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC18.73■□□□□ 0.59
NPHP1O15259 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.73■□□□□ 0.59
NPHP1O15259 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 AC132192.2-201ENST00000596206 1147 ntBASIC18.73■□□□□ 0.59
NPHP1O15259 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
NPHP1O15259 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPHP1O15259 AC006058.4-201ENST00000624016 1670 ntBASIC18.73■□□□□ 0.59
NPHP1O15259 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.73■□□□□ 0.59
NPHP1O15259 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 REXO1L4P-201ENST00000605109 1937 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
NPHP1O15259 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC18.72■□□□□ 0.59
NPHP1O15259 AC104784.1-201ENST00000473096 294 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 RN7SL818P-201ENST00000485099 259 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
NPHP1O15259 AC242376.1-201ENST00000559033 726 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 AC005962.1-201ENST00000584100 773 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 RN7SL725P-201ENST00000606439 259 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 AC103691.2-201ENST00000618824 433 ntBASIC18.72■□□□□ 0.59
NPHP1O15259 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.72■□□□□ 0.59
NPHP1O15259 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
NPHP1O15259 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
NPHP1O15259 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
NPHP1O15259 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms