Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 GOLGA8DP-202ENST00000341390 2184 ntBASIC11.52□□□□□ -0.57
CCDC140Q96MF4 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 AC006480.2-201ENST00000609770 1337 ntBASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC11.52□□□□□ -0.57
CCDC140Q96MF4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AC005034.1-201ENST00000426657 489 ntBASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AC106886.1-201ENST00000568660 600 ntBASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AL035252.4-201ENST00000624174 288 ntBASIC11.51□□□□□ -0.57
CCDC140Q96MF4 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 AL136379.1-201ENST00000623471 2642 ntBASIC11.51□□□□□ -0.57
CCDC140Q96MF4 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
CCDC140Q96MF4 SNX18-202ENST00000343017 3140 ntBASIC11.51□□□□□ -0.57
CCDC140Q96MF4 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC11.5□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms