Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 C1QBPP1-201ENST00000400117 770 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 AC022616.1-201ENST00000518688 554 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 AP001582.1-201ENST00000525856 295 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 AC009118.2-201ENST00000613275 655 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 AL603764.1-201ENST00000636452 321 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
VPS39Q96JC1 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.98□□□□□ -0.01
VPS39Q96JC1 SLC7A15P-201ENST00000424028 1363 ntBASIC14.98□□□□□ -0.01
VPS39Q96JC1 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC092135.3-201ENST00000624151 1846 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AL442647.2-201ENST00000429864 857 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC114812.1-204ENST00000449669 728 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC026434.2-201ENST00000506094 1078 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 RFPL4AP1-201ENST00000530883 850 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC124283.3-201ENST00000570869 594 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC093726.1-201ENST00000608064 963 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 AC092053.3-201ENST00000641308 4975 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 KRT8P22-201ENST00000562317 1415 ntBASIC14.97□□□□□ -0.01
VPS39Q96JC1 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS39Q96JC1 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS39Q96JC1 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS39Q96JC1 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS39Q96JC1 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms