Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HPS3Q969F9 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.47■□□□□ 0.23
HPS3Q969F9 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.47■□□□□ 0.23
HPS3Q969F9 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
HPS3Q969F9 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 TPT1P11-201ENST00000458482 498 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 FTLP10-202ENST00000505798 471 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 GCOM2-201ENST00000509133 1104 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 RNA5SP486-201ENST00000515961 83 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.47■□□□□ 0.23
HPS3Q969F9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.47■□□□□ 0.23
HPS3Q969F9 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 KRT90P-201ENST00000549264 1064 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
HPS3Q969F9 MIR4683-201ENST00000579659 81 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.47■□□□□ 0.23
HPS3Q969F9 OR10B1P-201ENST00000601666 907 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.47■□□□□ 0.23
HPS3Q969F9 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.47■□□□□ 0.23
HPS3Q969F9 AC132938.4-201ENST00000623835 848 ntBASIC16.47■□□□□ 0.23
HPS3Q969F9 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.47■□□□□ 0.23
HPS3Q969F9 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HPS3Q969F9 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HPS3Q969F9 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.47■□□□□ 0.23
HPS3Q969F9 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
HPS3Q969F9 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.46■□□□□ 0.23
HPS3Q969F9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.46■□□□□ 0.23
HPS3Q969F9 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
HPS3Q969F9 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HPS3Q969F9 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.46■□□□□ 0.23
HPS3Q969F9 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 C2orf27AP3-201ENST00000434123 579 ntBASIC16.46■□□□□ 0.23
HPS3Q969F9 AC016694.1-201ENST00000434179 700 ntBASIC16.46■□□□□ 0.23
HPS3Q969F9 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.46■□□□□ 0.23
HPS3Q969F9 KRT17P7-201ENST00000451704 1104 ntBASIC16.46■□□□□ 0.23
HPS3Q969F9 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.46■□□□□ 0.23
HPS3Q969F9 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 AL354718.3-201ENST00000616414 581 ntBASIC16.46■□□□□ 0.23
HPS3Q969F9 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 CR382287.1-201ENST00000623954 586 ntBASIC16.46■□□□□ 0.23
HPS3Q969F9 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HPS3Q969F9 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.46■□□□□ 0.23
HPS3Q969F9 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HPS3Q969F9 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
HPS3Q969F9 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HPS3Q969F9 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.46■□□□□ 0.22
HPS3Q969F9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
HPS3Q969F9 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
HPS3Q969F9 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.46■□□□□ 0.22
HPS3Q969F9 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.46■□□□□ 0.22
HPS3Q969F9 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HPS3Q969F9 MRPL37P1-201ENST00000592451 1337 ntBASIC16.45■□□□□ 0.22
HPS3Q969F9 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS3Q969F9 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS3Q969F9 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS3Q969F9 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.45■□□□□ 0.22
HPS3Q969F9 MYO15B-237ENST00000642007 4893 ntBASIC16.45■□□□□ 0.22
HPS3Q969F9 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.45■□□□□ 0.22
HPS3Q969F9 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HPS3Q969F9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HPS3Q969F9 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HPS3Q969F9 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms