Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 AC026691.1-201ENST00000602502 2017 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 AC023141.7-201ENST00000430646 407 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 AC092896.1-201ENST00000465850 380 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 RN7SL277P-201ENST00000481521 288 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 MIR4472-1-201ENST00000584349 80 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 PRMT1P1-201ENST00000604252 1009 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 AC002044.2-201ENST00000624910 970 ntBASIC12.02□□□□□ -0.49
VPS13CQ709C8 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
VPS13CQ709C8 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
VPS13CQ709C8 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 OR10N1P-201ENST00000392758 869 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC113347.2-201ENST00000512350 279 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 KRT8P2-201ENST00000556193 944 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC090136.2-201ENST00000517809 420 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 IGHEP2-201ENST00000519308 1256 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 TRMT112P3-201ENST00000580149 358 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 CYP4F36P-201ENST00000589193 186 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC006372.4-201ENST00000624122 1543 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 WASH3P-207ENST00000560956 1394 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 KRT18P46-201ENST00000435568 1279 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 BPIFB5P-201ENST00000457066 1099 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 OR5BD1P-201ENST00000532527 817 ntBASIC12.01□□□□□ -0.49
VPS13CQ709C8 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
VPS13CQ709C8 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC12.01□□□□□ -0.49
VPS13CQ709C8 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12□□□□□ -0.49
VPS13CQ709C8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC12□□□□□ -0.49
VPS13CQ709C8 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC12□□□□□ -0.49
VPS13CQ709C8 RGS5-216ENST00000449680 788 ntTSL 3 BASIC12□□□□□ -0.49
VPS13CQ709C8 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12□□□□□ -0.49
VPS13CQ709C8 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
VPS13CQ709C8 DKFZP434H168-201ENST00000567381 1905 ntBASIC12□□□□□ -0.49
VPS13CQ709C8 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12□□□□□ -0.49
VPS13CQ709C8 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12□□□□□ -0.49
VPS13CQ709C8 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12□□□□□ -0.49
VPS13CQ709C8 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
VPS13CQ709C8 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12□□□□□ -0.49
VPS13CQ709C8 DPY19L2P5-201ENST00000456300 331 ntBASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms