Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 AC139712.1-201ENST00000378256 1875 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 NKAIN1P1-201ENST00000435754 582 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 AL157407.1-201ENST00000435784 904 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.28□□□□□ -0.28
GFRA1P56159 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.28□□□□□ -0.28
GFRA1P56159 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.28□□□□□ -0.28
GFRA1P56159 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.28□□□□□ -0.28
GFRA1P56159 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.28□□□□□ -0.28
GFRA1P56159 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.28□□□□□ -0.28
GFRA1P56159 AC103988.2-201ENST00000561804 725 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 AP000346.4-201ENST00000614827 381 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 AC004923.1-202ENST00000642106 209 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
GFRA1P56159 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 AL008718.2-201ENST00000609206 1313 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
GFRA1P56159 AC138028.6-201ENST00000616106 1482 ntBASIC13.28□□□□□ -0.28
GFRA1P56159 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
GFRA1P56159 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
GFRA1P56159 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
GFRA1P56159 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.28□□□□□ -0.28
GFRA1P56159 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
GFRA1P56159 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.27□□□□□ -0.28
GFRA1P56159 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.27□□□□□ -0.28
GFRA1P56159 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.27□□□□□ -0.28
GFRA1P56159 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
GFRA1P56159 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
GFRA1P56159 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.27□□□□□ -0.28
GFRA1P56159 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.28
GFRA1P56159 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
GFRA1P56159 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
GFRA1P56159 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.27□□□□□ -0.29
GFRA1P56159 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
GFRA1P56159 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 BX284668.4-201ENST00000453917 508 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 AKR7A2P1-201ENST00000460134 915 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.27□□□□□ -0.29
GFRA1P56159 AC005740.2-201ENST00000511085 419 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 SCARNA20.5-201ENST00000516991 142 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 RN7SL163P-201ENST00000583100 276 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 AC020914.3-201ENST00000594712 304 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 AC009884.2-201ENST00000603110 324 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
GFRA1P56159 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
GFRA1P56159 CICP14-201ENST00000629111 2732 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.27□□□□□ -0.29
GFRA1P56159 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
GFRA1P56159 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
GFRA1P56159 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
GFRA1P56159 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.27□□□□□ -0.29
GFRA1P56159 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
GFRA1P56159 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms