Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SUMO3P55854 KHSRPP1-201ENST00000427983 1768 ntBASIC13.45□□□□□ -0.26
SUMO3P55854 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.45□□□□□ -0.26
SUMO3P55854 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SUMO3P55854 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SUMO3P55854 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SUMO3P55854 SHC1P1-201ENST00000425230 1745 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.44□□□□□ -0.26
SUMO3P55854 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.44□□□□□ -0.26
SUMO3P55854 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
SUMO3P55854 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SUMO3P55854 AC099336.1-201ENST00000417053 1171 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 FAM21FP-201ENST00000426241 1131 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.44□□□□□ -0.26
SUMO3P55854 ATP5G2P4-201ENST00000442175 420 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 AP006547.1-201ENST00000563435 692 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 EEF1DP1-201ENST00000585891 896 ntBASIC13.44□□□□□ -0.26
SUMO3P55854 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
SUMO3P55854 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.44□□□□□ -0.26
SUMO3P55854 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SUMO3P55854 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SUMO3P55854 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
SUMO3P55854 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 MIR658-201ENST00000385210 100 ntBASIC13.43□□□□□ -0.26
SUMO3P55854 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.43□□□□□ -0.26
SUMO3P55854 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.43□□□□□ -0.26
SUMO3P55854 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 HIST2H2BB-201ENST00000449108 381 ntBASIC13.43□□□□□ -0.26
SUMO3P55854 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.43□□□□□ -0.26
SUMO3P55854 RNA5SP412-201ENST00000516234 123 ntBASIC13.43□□□□□ -0.26
SUMO3P55854 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SUMO3P55854 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 AC244157.2-201ENST00000616239 1006 ntBASIC13.43□□□□□ -0.26
SUMO3P55854 AC027601.3-201ENST00000622907 509 ntBASIC13.43□□□□□ -0.26
SUMO3P55854 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.43□□□□□ -0.26
SUMO3P55854 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SUMO3P55854 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms