Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PKNOX1P55347 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PKNOX1P55347 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.67□□□□□ -0.06
PKNOX1P55347 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
PKNOX1P55347 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC14.67□□□□□ -0.06
PKNOX1P55347 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.67□□□□□ -0.06
PKNOX1P55347 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.67□□□□□ -0.06
PKNOX1P55347 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
PKNOX1P55347 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.67□□□□□ -0.06
PKNOX1P55347 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.67□□□□□ -0.06
PKNOX1P55347 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 AC104794.3-201ENST00000566840 1248 ntBASIC14.67□□□□□ -0.06
PKNOX1P55347 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
PKNOX1P55347 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.67□□□□□ -0.06
PKNOX1P55347 BX539320.1-201ENST00000623759 877 ntBASIC14.67□□□□□ -0.06
PKNOX1P55347 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 AL354702.1-201ENST00000442006 1960 ntBASIC14.67□□□□□ -0.06
PKNOX1P55347 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
PKNOX1P55347 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
PKNOX1P55347 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
PKNOX1P55347 COL6A4P2-202ENST00000504443 2753 ntBASIC14.67□□□□□ -0.06
PKNOX1P55347 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
PKNOX1P55347 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
PKNOX1P55347 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.66□□□□□ -0.06
PKNOX1P55347 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
PKNOX1P55347 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AL512638.1-201ENST00000457493 794 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 DOC2GP-202ENST00000514950 1163 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC023310.3-201ENST00000557027 670 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC100756.1-201ENST00000562736 682 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC138749.3-201ENST00000567691 622 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.66□□□□□ -0.06
PKNOX1P55347 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
PKNOX1P55347 BRI3BPP1-201ENST00000594224 787 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 AC116165.1-201ENST00000611806 668 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.66□□□□□ -0.06
PKNOX1P55347 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.66□□□□□ -0.06
PKNOX1P55347 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms