Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDH11P55287 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
CDH11P55287 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDH11P55287 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CDH11P55287 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDH11P55287 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.73□□□□□ -0.21
CDH11P55287 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC13.73□□□□□ -0.21
CDH11P55287 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CDH11P55287 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.73□□□□□ -0.21
CDH11P55287 TPT1P11-201ENST00000458482 498 ntBASIC13.73□□□□□ -0.21
CDH11P55287 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 KRT18P43-201ENST00000469825 1281 ntBASIC13.73□□□□□ -0.21
CDH11P55287 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 AC092337.1-201ENST00000568699 1129 ntBASIC13.73□□□□□ -0.21
CDH11P55287 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CDH11P55287 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.73□□□□□ -0.21
CDH11P55287 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.73□□□□□ -0.21
CDH11P55287 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.73□□□□□ -0.21
CDH11P55287 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CDH11P55287 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CDH11P55287 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
CDH11P55287 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.72□□□□□ -0.21
CDH11P55287 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC13.72□□□□□ -0.21
CDH11P55287 MYCLP2-201ENST00000449268 967 ntBASIC13.72□□□□□ -0.21
CDH11P55287 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 AC123567.1-201ENST00000548294 1261 ntBASIC13.72□□□□□ -0.21
CDH11P55287 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CDH11P55287 AC093726.1-201ENST00000608064 963 ntBASIC13.72□□□□□ -0.21
CDH11P55287 AC099568.2-201ENST00000609194 695 ntBASIC13.72□□□□□ -0.21
CDH11P55287 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 AL359881.3-201ENST00000602640 1721 ntBASIC13.72□□□□□ -0.21
CDH11P55287 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.72□□□□□ -0.21
CDH11P55287 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.72□□□□□ -0.21
CDH11P55287 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDH11P55287 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH11P55287 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH11P55287 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH11P55287 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms