Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HOXC9P31274 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HOXC9P31274 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC9P31274 AC022532.1-201ENST00000624563 1728 ntBASIC19.39■□□□□ 0.7
HOXC9P31274 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
HOXC9P31274 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC9P31274 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC9P31274 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC9P31274 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HOXC9P31274 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC9P31274 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC9P31274 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HOXC9P31274 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC9P31274 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
HOXC9P31274 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC9P31274 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HOXC9P31274 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
HOXC9P31274 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
HOXC9P31274 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
HOXC9P31274 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC9P31274 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC19.38■□□□□ 0.69
HOXC9P31274 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC9P31274 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC9P31274 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC9P31274 IGHV3-37-201ENST00000518544 340 ntBASIC19.38■□□□□ 0.69
HOXC9P31274 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 POLD4-208ENST00000532830 904 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXC9P31274 KRT8P1-201ENST00000557533 1207 ntBASIC19.38■□□□□ 0.69
HOXC9P31274 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC19.38■□□□□ 0.69
HOXC9P31274 MIR6858-201ENST00000620733 67 ntBASIC19.38■□□□□ 0.69
HOXC9P31274 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
HOXC9P31274 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HOXC9P31274 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
HOXC9P31274 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC9P31274 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HOXC9P31274 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
HOXC9P31274 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC9P31274 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC19.37■□□□□ 0.69
HOXC9P31274 RPL13AP19-201ENST00000434320 584 ntBASIC19.37■□□□□ 0.69
HOXC9P31274 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXC9P31274 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXC9P31274 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXC9P31274 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXC9P31274 AC087392.5-201ENST00000612517 489 ntBASIC19.37■□□□□ 0.69
HOXC9P31274 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXC9P31274 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms