Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTPN6P29350 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
PTPN6P29350 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
PTPN6P29350 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTPN6P29350 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.16□□□□□ -0.14
PTPN6P29350 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
PTPN6P29350 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 MBLAC2-202ENST00000514906 1936 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
PTPN6P29350 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.15□□□□□ -0.14
PTPN6P29350 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PTPN6P29350 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.15□□□□□ -0.14
PTPN6P29350 AL512384.1-201ENST00000406683 331 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 RN7SL837P-201ENST00000463010 287 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
PTPN6P29350 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.15□□□□□ -0.14
PTPN6P29350 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.15□□□□□ -0.14
PTPN6P29350 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 AC124283.3-201ENST00000570869 594 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 AC133539.2-201ENST00000604757 467 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 IGHV3-72-202ENST00000621503 303 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 OR2I1P-210ENST00000642037 4691 ntBASIC14.15□□□□□ -0.14
PTPN6P29350 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.15□□□□□ -0.14
PTPN6P29350 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTPN6P29350 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PTPN6P29350 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
PTPN6P29350 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTPN6P29350 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
PTPN6P29350 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.14□□□□□ -0.15
PTPN6P29350 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PTPN6P29350 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.14□□□□□ -0.15
PTPN6P29350 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PTPN6P29350 AC120045.2-201ENST00000567334 178 ntBASIC14.14□□□□□ -0.15
PTPN6P29350 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.14□□□□□ -0.15
PTPN6P29350 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 BX539320.1-201ENST00000623759 877 ntBASIC14.14□□□□□ -0.15
PTPN6P29350 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 AL359881.3-201ENST00000602640 1721 ntBASIC14.14□□□□□ -0.15
PTPN6P29350 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.14□□□□□ -0.15
PTPN6P29350 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTPN6P29350 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.14□□□□□ -0.15
PTPN6P29350 INE2-201ENST00000630399 1874 ntBASIC14.14□□□□□ -0.15
PTPN6P29350 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms