Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.95■□□□□ 0.3
SMARCA1P28370 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.95■□□□□ 0.3
SMARCA1P28370 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 KRT8P13-201ENST00000463294 1010 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC091804.1-201ENST00000486888 567 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 AP001258.2-201ENST00000529891 490 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 RBM8B-201ENST00000555532 525 ntBASIC16.95■□□□□ 0.3
SMARCA1P28370 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.95■□□□□ 0.3
SMARCA1P28370 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.95■□□□□ 0.3
SMARCA1P28370 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SMARCA1P28370 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMARCA1P28370 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.95■□□□□ 0.3
SMARCA1P28370 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
SMARCA1P28370 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SMARCA1P28370 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.94■□□□□ 0.3
SMARCA1P28370 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 ZNF767P-206ENST00000513792 565 ntBASIC16.94■□□□□ 0.3
SMARCA1P28370 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.94■□□□□ 0.3
SMARCA1P28370 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 SNORD3B-2-202ENST00000571722 791 ntBASIC16.94■□□□□ 0.3
SMARCA1P28370 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 AL136295.7-201ENST00000619226 1200 ntBASIC16.94■□□□□ 0.3
SMARCA1P28370 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SMARCA1P28370 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SMARCA1P28370 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
SMARCA1P28370 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.94■□□□□ 0.3
SMARCA1P28370 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SMARCA1P28370 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.94■□□□□ 0.3
SMARCA1P28370 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SMARCA1P28370 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.93■□□□□ 0.3
SMARCA1P28370 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.93■□□□□ 0.3
SMARCA1P28370 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.93■□□□□ 0.3
SMARCA1P28370 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.93■□□□□ 0.3
SMARCA1P28370 MIR1247-201ENST00000408206 136 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.93■□□□□ 0.3
SMARCA1P28370 GPAA1P2-201ENST00000417923 928 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 ST13P19-201ENST00000442505 1124 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.93■□□□□ 0.3
SMARCA1P28370 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.93■□□□□ 0.3
SMARCA1P28370 AC005962.1-201ENST00000584100 773 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.93■□□□□ 0.3
SMARCA1P28370 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.93■□□□□ 0.3
SMARCA1P28370 AC133540.1-201ENST00000620845 1019 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
SMARCA1P28370 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 MBLAC2-202ENST00000514906 1936 ntBASIC16.93■□□□□ 0.3
SMARCA1P28370 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SMARCA1P28370 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC16.93■□□□□ 0.3
SMARCA1P28370 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms